GWAS-related eQTLs across different cancer types
We identified 337,131 eQTLs that overlap with GWAS linkage disequilibrium (LD) regions (r² ≥ 0.5).
|
Cancer type
|
eQTL type
|
tagSNP
|
Gene position (hg19)
|
p-value
|
|||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| BLCA | trans | rs1056667 | 1 | rs1321479 | chr6:26501897 | ZNF322B | chr9:99957633-99961910:- | -0.46 | -7.94 | 2.2E-14 | Educational attainment |
| BLCA | trans | rs1056667 | 1 | rs1321480 | chr6:26532742 | ZNF322B | chr9:99957633-99961910:- | 0.45 | 7.89 | 3.22E-14 | Educational attainment |
| BLCA | trans | rs1056667 | 1 | rs1321481 | chr6:26538210 | ZNF322B | chr9:99957633-99961910:- | 0.46 | 8.01 | 1.35E-14 | Educational attainment |
| BLCA | trans | rs853679 | 1 | rs1419183 | chr6:28242794 | BTN3A2 | chr6:26365398-26378546:+ | -0.38 | -6.06 | 3.17E-9 | Depression |
| BLCA | trans | rs1056667 | 1 | rs1535277 | chr6:26567802 | ZNF322B | chr9:99957633-99961910:- | 0.46 | 8.07 | 9.07E-15 | Educational attainment |
| BLCA | trans | rs6600671 | 1 | rs1591882 | chr1:121183313 | NBPF14 | chr1:148003643-148346791:- | 0.28 | 6.12 | 2.33E-9 | Hip geometry |
| BLCA | trans | rs13358864 | 1 | rs17051818 | chr5:167492558 | KRTAP3-3 | chr17:39149682-39150385:- | 0.3 | 6.18 | 1.63E-9 | Uric acid levels |
| BLCA | trans | rs2786111 | 1 | rs1764786 | chr1:197300496 | CSNK1A1 | chr5:148872949-148931007:- | -0.29 | -6.01 | 4.28E-9 | Lupus nephritis in systemic lupus erythematosus |
| BLCA | trans | rs6600671 | 1 | rs1832558 | chr1:121177380 | NBPF14 | chr1:148003643-148346791:- | 0.28 | 6.14 | 2.01E-9 | Hip geometry |
| BLCA | trans | rs6499100 | 1 | rs1833196 | chr16:52821090 | RPL19P12 | chr7:102781717-102782850:- | 0.39 | 6.26 | 1.04E-9 | Tetralogy of Fallot |
| BLCA | trans | rs6600671 | 1 | rs1856572 | chr1:121169579 | NBPF14 | chr1:148003643-148346791:- | 0.29 | 6.44 | 3.52E-10 | Hip geometry |
| BLCA | trans | rs1056667 | 1 | rs1884946 | chr6:26545308 | ZNF322B | chr9:99957633-99961910:- | 0.46 | 8 | 1.46E-14 | Educational attainment |
| BLCA | trans | rs1056667 | 1 | rs1884948 | chr6:26567988 | ZNF322B | chr9:99957633-99961910:- | 0.46 | 8.07 | 9.07E-15 | Educational attainment |
| BLCA | trans | rs1056667 | 1 | rs1884949 | chr6:26568067 | ZNF322B | chr9:99957633-99961910:- | 0.46 | 8.07 | 9.07E-15 | Educational attainment |
| BLCA | trans | rs2084385 | 1 | rs2084385 | chr3:196553867 | LOC646214 | chr15:21932514-21940739:- | -0.67 | -7.32 | 1.5E-12 | Total ventricular volume (Alzheimer's disease interaction) |